Legendary Trainer Eagun - Pichu 45, Pichu 45, Pikachu 50, Pikachu 50, Raichu 55, Raichu 55

All of these rodents have volt-tackle. Beat him, and he will invite you to come to the Orre Colosseum he just opened up to the northwest of Pyrite, where the Deep Colosseum used to be. But now, head to the Gateon Port.

Gateon Port:
Your Miror B Radar will pick up Miror B’s location at the Gateon Port, and you head back to the lighthouse to the north. Go up, and he will be dancing on at the top with his Ludicolos. Be prepared as his team is pretty strong:

Wanderer Miror B - Ludicolo 57, Ludicolo 57, Ludicolo 57, Ludicolo 57, Ludicolo 57, Dragonite 55+

Snag this very last shadow Pokémon, and Miror B will leave, for good this time, as he discovers the antenna attached to his afro and wrecks up your radar before his runs off.

Orre Colosseum:
While you’re waiting for your shadows to purify at the Purify Chambers, the Orre Colosseum is the place to go. The Orre Colosseum is designed like the battle mode of XD’s predecessor, Colosseum, in which your opponent’s Pokémon will match the highest of yours, and you cannot have duplicate Pokémon on your team, or members holding the same item. The restrictions are similar to the Battle Frontier in Emerald, where Mewtwo, Mew, Lugia, Ho-Oh, Celebi, Kyogre, Groudon, Rayquaza, Jirachi and Deoxys are not allowed to participate. Soul Dew on Latios and Latias is also restricted.

Battles will be in a series of 4, similar to the Pyrite Colosseum and the Realgam Tower Colosseum. The Cipher Admins you have beaten in XD, together with Gonzap, Chobin and his Robo Groudon, will pose as the last trainers in the challenges, following this sequence:

Lovrina, Snattle, Gorigan, Chobin & Robo Groudon, Gonzap, Ardos, Eldes

But to wind up the unfinished business of the scenario mode, you only have to beat Lovrina. After you beat her, Eagun, who’s standing right outside the Colosseum, will reward the title Lovrina Fan Club Member 1 to you, and you will receive an urgent mail from his wife, Beluh, in Agate. She prompts you to pay her a visit immediately, and so it’s Agate you go.

Agate Village:
When you find Beluh in her house, she will tell you that the overworld Pokémon in Agate have been quite weird lately, especially the Wobbuffet in old man Bilbo’s house. She wants you to check them out, and you walk around to see that the overworld Pokémon have all become mute. Visit Bilbo’s house, and he will tell you that he has equipped his Wobbuffet with a translator machine. The source of the machines is an old man in the Pokemon Center, and you go there to learn from him that the machines are all Prof. Kaminko’s products. This old man happens to be the same guy who bought the quirky Shuckle shoes from Kaminko.

Kaminko’s House:
So to trace down the underlying problem, you head back to find Prof. Kaminko, and he is shocked that the translators have been sold to Agate. He explains that they are supposed to translate pokemon’s cries into human language, but he never really released them because they were his earlier works. He rationalizes that Chobin must have done so without his consent, and so gives you Voice Capsule 1 to try saving the Pokémon.

Agate Village:
Take the Voice Capsule 1 to the old lady’s house with the Combusken. Talk to the Combusken, and the Voice Capsule to remind it of its cry, and enables it to remove the translator from its body. From here, you head back and forth between Kaminko’s House and Agate, and try to match the Voice Capsules to the Pokémon. 2 is for Poochyena, 3 is for Taillow, and 4 is for Wobbuffet. However, Capsule 4 fails to work, and you head back to Kaminko’s House again.

Kaminko’s House:
Upon arrival, you will receive another urgent mail from Nett’s sister in Pyrite, telling you that her Shroomish has gone mute as well. Kaminko gives you Voice Capsule 5, and you take it over there to save the Shroomish. Nett’s sister will then mention about various overworld Pokémon in Gateon Port and Phenac having the same problem, and you go back to Kaminko to seek help. Kaminko tells you that he has run out of capsules, but gives you a Decoding Machine, which will restore a pokemon’s voice after you answer a quiz it generates correctly. Head to Gateon first.

Gateon Port:
Just talk to the overworld Pokémon and the machine will generate the quiz. The Pokémon here you should save are:
1) Oddish in sailor’s house
Q - What stone evolves this pokemon’s evolved form into a beautiful pokemon?
A - Sun Stone
2) Magnemite in old man’s house next to bridges
Q - What does this pokemon evolve into?
A - Magneton
3, 4) Two Krabbies at the Krabby Pavillion, second floor
Q - What is this pokemon’s name?
A - Tarou (the left one), Hanako (the right one)
After saving these 4 Pokémon, head to Phenac.

Phenac City:
1) Castform of running athelete
Q - What kind of the pokemon is this?
A - The weather pokemon
2) Azumarill in front of the Pokemon Center
Q - What is this pokemon’s pre-evolved form?
A - Marill
3) Linoone to the top right corner
Q - Which is this pokemon’s cry? (you will be given 2 clips to choose)
A - the second one (may be different)
4) Seedot in front of Phenac Stadium
Q - What is this pokemon?
A - Seedot
Now head back to Agate.

Agate Village:
First, go to Bilbo’s Wobbuffet again, but the Decoding Machine apparently doesn’t work either. Then, go to the Lotad to the far right of the village, there shouldn’t be quizzes this time, and Lotad will gradually learn its cry again after playing around with the machine. So, Wobbuffet is the only one left now. Head back to Kaminko’s House, and he will tell you that the third and final way to restore a pokemon’s cry is to have a trainer who shares a close bond with it to mimic its cry. You return to Agate to tell old man Bilbo this, and he finally manages to make his Wobbuffet cry out again. You head up to Beluh’s house, and she will thank you by rewarding you the Lucky Egg. If you go back to Kaminko’s House, he will be amused that humans and Pokémon don’t need a common language to share a deep bond, and shoos you off again saying he is busy with work. You should head back to the Orre Colosseum to beat the remaining challengers then, though the scenario has technically ended here.

You can head back to Citadark Isle to challenge Greevil over and over again (and to snag the shadows again in case you fainted them the first try). His team will now consist of:

Cipher Boss Greevil - Manectric 50, Swellow 50, Starmie 50, Granbull 50, Altaria 50, Aerodactyl 50

If you have snagged and purifed all 83 Pokémon, there will be an extra scene to the ending animation. You will be shown putting down the snag machine back on Joshua's table at the HQ Lab, signifying a completion of your work. However, you still actually have the machine with you after the end credits roll.

Others:
The game technically ends at this point, and the rest to to purify all the shadow Pokémon. Shadow Lugia, however, cannot be purified simply by the means that work for the other shadows. Cologne and battling won’t lower its heart gauge. The Purify Chamber won’t work by simply use, but you actually have to maximize the tempo of all 9 Purify Chambers to the max (by having 4 Pokémon in each chamber which type are effective against each other in a clockwise manner), then Shadow Lugia will be purified instantly when you place it into any one of the chambers. The other chambers can be occupied by other shadows when you do this, so as long as the tempo is maxed out in all Purify Chambers, whether or not you have purified the other shadows, it won’t affect Shadow Lugia’s purification.