Super Training is a combination of mini-games. Only one of which is currently known. In this game, you have a Pokémon in the field and you need to control it, using the touchscreen or the Circle Pad, in order to deflect Balloon Bots balls from going into your goal, while you send various balls into your opponent's goal.
Each Pokémon uses a specific ball at random, based mostly upon the species of Pokémon you are using. These balls have special effects
Black: These balls are average in size, speed and power, but can be shot rapidly
Blue: These balls are incredibly fast with average power. They are small
Green: These balls are incredibly powerful but are slow to fire.
Orange: These balls have an average speed, and are a bit weak. However, they are very large
Yellow: These balls are lower power and have an average speed. They are small, but can be shot rapidly
There are three different levels to the games, unlocked as you go through Level 1, 2 and 3. When you complete the games, you get an increase of Effort Values in that one specific stat. Level 1 gives you +4, Level 2 gives you +8 and Level 3 gives you +12.
Each individual Pokémon's progress is tracked, with them receiving medals for each game completed.